Human Pathophysiology & Pharmacology 1
T1 2026 · Side 1 of 2
Pathophysiology · EOTE Modules 3–7
0 · Exam Blueprintread first
Two assessments drive the marks: the A2 concept map (40%) and the End-of-Trimester Exam (40%) (the in-class quiz, ~20%, covers Modules 1–2 only). The EOTE = 50 MCQ (half the marks) + 12 short-answer (half) and examines Modules 3–7: immunity → cancer → MSK/pain → genetics & ageing → neuro/autonomic + the pharmacology woven through.
Train both reflexes: MCQ recall = the tables & trap-facts here; SAQ = explain a mechanism in prose — walk a pathophysiological cascade or a drug's mechanism of action in 3–5 linked steps.
0b · The A2 Cascade Templateconcept-map spine
The A2 concept map (and every "explain the pathophysiology" SAQ) follows ONE colour-coded chain. Learn the shape and slot any disease in:
RF → Aetiology → Pathophysiology → ManifestationsRisk factor → aetiology/trigger → pathophysiology (step-by-step) → clinical manifestations → +1 diagnostic test +1 management
Worked (cervical cancer, the A2 case): RF = smoking, immunosuppression, multiple partners → aetiology = persistent high-risk HPV infection → pathophys = viral oncoproteins inactivate p53/Rb tumour suppressors → dysplasia (CIN) → carcinoma in situ → invasive squamous-cell carcinoma → local + lymphatic spread → manifestations = abnormal/post-coital bleeding, discharge, pelvic pain. Dx = Pap/HPV test + biopsy; Mx = surgery/radiotherapy ± chemo. (HIV co-infection accelerates it via CD4 loss.) Reuse this exact skeleton for stroke, MS, arthritis or any disease the exam throws at you.
0c · Assessment Shapewhere the marks are
| Item | Wt | Form & scope |
|---|---|---|
| A1 quiz | ~20% | 20 MCQ/20 min in class · Mod 1–2 |
| A2 map | 40% | concept map + 500 words |
| A3 EOTE | 40% | 50 MCQ + 12 SAQ · Mod 3–7 |
The MCQ half rewards breadth (recognise the trap); the SAQ half rewards depth (explain a cascade or a mechanism of action in prose). Weight prep on immunology → cancer → MSK/pain → genetics/ageing → neuro/autonomic. (Modules 1–2 are A1 scaffolding, not on the EOTE.)
0d · Foundations (scaffold)Mod 1–2 underpin
Cell adaptation: hypertrophy = bigger cells; hyperplasia = more cells; metaplasia = reversible cell-type switch; dysplasia = disordered, pre-malignant. Necrosis = swelling + lysis + inflammation, not ATP-needing; apoptosis = shrinkage + apoptotic bodies, no inflammation, ATP-dependent.
Healing: resolution / regeneration (same tissue, needs mitosis) / repair-fibrosis (scar, loses function). 1st intention (edges approximated) vs 2nd (open gap, bigger scar). Healing needs age, nutrition (protein, vit C, zinc), oxygenation; corticosteroids impair it.
1 · Immunity · Innate vs Adaptive3.1 ⭐
Innate — non-specific, immediate, no memory. 1st line = barriers (skin, mucosa, cilia, stomach acid, lysozyme, flora); 2nd line = inflammation, fever, phagocytes, NK cells, complement, interferons.
Adaptive — specific, slower, has memory; recognises antigens. Two arms:
- Humoral = B cells → plasma cells → antibodies; hits extracellular pathogens/toxins.
- Cell-mediated = T cells; hits intracellular (viruses), cancer, transplants.
Inflammation & fever are INNATE (2nd line) — a classic MCQ trap.
1b · Immune Cellswho does what
| Cell | Role |
|---|---|
| Neutrophil | 1st responder, acute bacterial, phagocytosis |
| Macrophage | phagocytosis, APC, chronic, cytokines |
| T-helper (CD4) | coordinate both arms (cytokines) |
| Cytotoxic T (CD8) | kill infected/cancer cells |
| B cell | → plasma cell (antibody) + memory |
| NK cell | innate; kill virus/tumour, no sensitisation |
T cells mature in the thymus; B cells in bone marrow.
1c · Primary vs Secondary Responsebasis of vaccines
Primary — 1st exposure; 1–2 week lag, mainly IgM, low titre. Secondary — re-exposure; faster, stronger, higher titre (mainly IgG) via memory cells. Vaccination exploits this.
1d · Complement & Mediatorsinnate effectors
Complement = plasma protein cascade: opsonisation (tag for phagocytosis), chemotaxis (C5a), anaphylatoxins (C3a/C5a → mast-cell degranulation), and the membrane attack complex (MAC) that lyses pathogens.
Interferons = antiviral; cytokines (TNF, IL-1, IL-6) drive fever & acute-phase response. Markers: CRP, ESR, WBC (neutrophils ↑ acute, lymphocytes ↑ viral/chronic).
1e · How Humoral Immunity WorksSAQ cascade
Antigen enters → APC (macrophage/dendritic) presents it → activates helper T (CD4) → cytokines stimulate the matching B cell → clonal expansion → plasma cells secrete antibody + memory B cells form. Antibodies then neutralise, opsonise and activate complement. This is the chain a "describe the immune response" SAQ wants.
Antibody functions: neutralisation, opsonisation (tag for phagocytes), complement activation (→ MAC), agglutination, and ADCC (flag cells for NK killing).
1f · Cell-Mediated Immunitythe T-cell arm
Intracellular antigen (virus, tumour) on the cell surface → cytotoxic T (CD8) → perforin/granzymes → apoptosis of the infected/abnormal cell. Helper T amplify; regulatory T enforce tolerance. This arm drives Type IV hypersensitivity and transplant rejection.
2 · The 5 Antibody Classes3.1 ⭐ MCQ gold
Y-shaped: 2 heavy + 2 light chains; variable region (Fab) binds antigen, constant region (Fc) = class/effector.
| Ig | Key fact |
|---|---|
| IgM | First & largest (pentamer); primary response; complement |
| IgG | Most abundant; only Ig to cross placenta; secondary response |
| IgA | Secretions — saliva, tears, mucus, breast milk |
| IgE | Mast cells/basophils; allergy/anaphylaxis, parasites |
| IgD | B-cell surface receptor; role least understood |
Mnemonic: M first, G placenta, A area-secretions, E allergy.
3 · Types of Immunity3.3 ⭐
| Type | Source | Memory |
|---|---|---|
| Natural active | infection → own Ab | Yes |
| Artificial active | vaccine → own Ab | Yes |
| Natural passive | placenta / breast milk | No |
| Artificial passive | Ab injected (antivenom) | No |
Active = you make it (slow, lasting, memory); passive = given (immediate, temporary, no memory). "Natural/artificial" = how acquired; "active/passive" = who makes the antibody. Passive's lack of memory is a common MCQ.
3b · Vaccination3.3.3
= artificial active immunity: a harmless form of the antigen (live-attenuated, inactivated, toxoid, subunit, mRNA) primes a primary response + memory cells, so the real exposure triggers a fast, strong secondary response. Boosters top up waning memory. Herd immunity protects the unvaccinated by cutting transmission.
Newborns get natural passive cover from maternal IgG (placenta) and IgA (breast milk) until their own active immunity matures — immediate but no memory, so it fades. Antivenom and post-exposure rabies immunoglobulin are the artificial passive equivalents.
3c · Immune Drugs3.2.3 / 3.3
- Immunosuppressants — transplant/autoimmune. Calcineurin inhibitors (cyclosporine) block IL-2 → ↓T-cell proliferation; AEs: nephro/hepatotoxicity, infection.
- Monoclonal antibodies ("-mab") — single clone, highly specific; e.g. anti-TNF infliximab, trastuzumab. Target cytokines or cancer antigens.
- Corticosteroids — broad immunosuppression for all 4 hypersensitivity types, anaphylaxis, autoimmune disease.
Corticosteroids preferentially suppress cell-mediated immunity (humoral less affected) and shrink lymphoid tissue. Prolonged use → infection risk, hyperglycaemia, osteoporosis, poor healing — never stop abruptly (adrenal suppression). They act higher than NSAIDs (block phospholipase A2 → stop prostaglandins AND leukotrienes), giving broader anti-inflammatory cover.
3d · Antibody Quick-RecallMCQ drill
- Crosses placenta = IgG; first/largest = IgM.
- Secretions/breast milk = IgA; allergy = IgE.
- Antigen binds the variable (Fab) region.
4 · Hypersensitivity I–IV3.2 ⭐ classic trap
Excessive immune response that damages tissue (needs prior sensitisation). Mnemonic "ACID".
| Type | Mediator | Mechanism / eg |
|---|---|---|
| I Allergic | IgE + mast | allergen → degranulation → histamine; mins. Hay fever, asthma, anaphylaxis |
| II Cytotoxic | IgG/IgM + comp. | Ab vs fixed cell-surface Ag → lysis. ABO, HDN, Graves' |
| III Complex | IgG complexes | Ag-Ab deposit in tissue → inflammation. SLE, GN, RA |
| IV Delayed | T cells (no Ab) | cytokines, 24–72 h. Contact dermatitis, Mantoux, T1DM, graft rejection |
I–III antibody-mediated; IV is T-cell, delayed, NO antibody. II = Ab vs fixed cell; III = circulating complexes.
4b · Anaphylaxis3.2.2 · SAQ
Severe systemic Type I. Mast cells dump histamine into the circulation → systemic vasodilation → severe hypotension; airway oedema + bronchoconstriction → respiratory failure.
Mechanism→sign: hypotension = vasodilation; wheeze/SOB = bronchoconstriction + oedema; hives = histamine on skin. 1st-line = adrenaline (NOT antihistamine): β2 bronchodilates, α1 vasoconstricts/raises BP.
4c · Telling II from IIIboth IgG
Both use IgG, but: Type II = antibody binds an antigen fixed on a cell surface → that cell is destroyed (ABO transfusion reaction, haemolytic disease of the newborn, Goodpasture's). Type III = antibody binds a soluble antigen → circulating immune complexes deposit in vessels/joints/kidney → complement-driven inflammation (SLE, post-strep glomerulonephritis, serum sickness).
Management across types: avoid the allergen; antihistamines + corticosteroids dampen I–III; adrenaline for anaphylaxis; immunosuppressants for severe autoimmune Type II/III; Type IV (contact dermatitis) → topical steroids. Diagnosis often uses skin-prick (I) or patch testing (IV); raised total/specific IgE supports Type I.
4d · Worked SAQ · Allergyexplain it
Q. Why does a second bee sting cause anaphylaxis but the first did not?
A (cascade): 1st sting sensitises — venom drives IgE production that coats mast cells. On re-exposure, venom cross-links that IgE → mast-cell degranulation → massive histamine release → systemic vasodilation (hypotension) + bronchoconstriction + oedema = Type I anaphylaxis. Give adrenaline first.
Key word: the first exposure causes no symptoms because it only builds the IgE — symptoms need pre-formed IgE on mast cells. The same "sensitisation then re-exposure" logic underlies all four types.
4e · Hypersensitivity RecallACID drill
- I IgE/histamine, immediate; II IgG vs fixed cell + complement.
- III IgG complexes deposit; IV T cells, no Ab, delayed (only IV).
5 · Immunodeficiency & HIV3.3 ⭐
Primary = intrinsic/genetic defect (Bruton's = B cell; DiGeorge = T cell; SCID = both). Secondary (acquired) = consequence of another factor: corticosteroids/stress, malnutrition, drugs (chemo), infection (HIV, TB), cancer (leukaemia, Hodgkin's).
HIV/AIDS — HIV infects & destroys helper T (CD4+) cells; slow decline → broad immune failure (CD4 controls BOTH arms). AIDS = CD4 < 200/mm³ → opportunistic infection (candidiasis, Pneumocystis) + cancers. Mx: antiretrovirals + prophylaxis. Transmission: sexual, blood/needles, mother→child (pregnancy/birth/breastfeeding).
6 · Autoimmunity3.2.3 ⭐
Loss of self-tolerance → auto-antibodies / self-reactive T cells attack self-antigens (normally deleted in the thymus). Cannot be cured — managed with NSAIDs, corticosteroids, anti-TNF, immunosuppressants.
| Disease | Target |
|---|---|
| Type 1 diabetes | pancreatic β-cells |
| Graves' / Hashimoto's | thyroid (hyper / hypo) |
| Multiple sclerosis | CNS myelin |
| SLE | DNA (multi-system) |
| Rheumatoid arthritis | synovial joints |
6b · Inflammation Recapunderpins it all
5 cardinal signs = redness, heat, swelling, pain, loss of function (vasodilation + ↑permeability + mediators). Histamine (mast cells) = early; prostaglandins = pain/fever (NSAID target). Acute = neutrophils; chronic (>2 wk) = macrophages + lymphocytes + fibrosis.
Exudate types: serous (watery — burns/blisters); fibrinous (sticky, → adhesions); purulent (pus → bacterial infection); haemorrhagic (RBCs → worst vessel damage).
6c · Microbiology ScaffoldMod 2 · infection
Bacteria = prokaryotes (no nucleus/organelles — what antibiotics exploit = selective toxicity). Classify by shape (cocci/bacilli), arrangement (clusters=staph, chains=strep), Gram stain, O₂ need.
| Gram + | Gram − | |
|---|---|---|
| Wall | thick peptidoglycan | thin + outer membrane |
| Stain | purple | pink |
| Toxin | exotoxin (protein, heat-labile) | endotoxin = LPS, heat-stable |
Chain of infection: agent → reservoir → exit → transmission → entry → susceptible host (break any link). Viruses = obligate intracellular; not killed by antibacterials.
Antibiotic targets (4): cell-wall synthesis (penicillins → lysis), protein synthesis (aminoglycosides, macrolides), DNA/replication (quinolones), folate synthesis (sulfonamides). Resistance via mutation/gene transfer → stewardship. Selective toxicity = hit bacterial structures absent from human cells. Endotoxin (LPS) at high dose → septic shock; exotoxins (tetanus, botulism, diphtheria) are among the most potent toxins known. Remember: exotoxin = protein/gram-pos/heat-labile; endotoxin = LPS/gram-neg/heat-stable.
7 · Neoplasia & CancerModule 4 ⭐
Neoplasia = new, uncontrolled, autonomous growth. Benign vs malignant:
| Benign | Malignant | |
|---|---|---|
| Growth | slow, expansile | rapid, infiltrative |
| Capsule | encapsulated | invasive |
| Differentiation | well | poor (anaplastic) |
| Metastasis | No | Yes |
Carcinogenesis = multistep initiation → promotion → progression; needs multiple mutations passed to daughter cells.
7b · Oncogenes & Spreadgain vs loss
- Proto-oncogene → mutation = gain of function → oncogene = accelerator stuck ON.
- Tumour suppressor (p53 "guardian", BRCA1/2) → loss of function = brakes failed.
Cell cycle G1→S→G2→M; cancer = checkpoint failure (esp. G1/S). Metastasis routes: local invasion, lymphatic, haematogenous (blood), transcoelomic seeding.
Grading vs Staging: grading = how abnormal cells look; staging = how far it spread (TNM = Tumour, Node, Metastasis). AU risks: tobacco, UV, alcohol, HPV, BRCA, age.
8 · MSK & PainModule 5 ⭐
Osteoporosis — ↓bone density (resorption > formation; post-menopausal ↓oestrogen) → fragility fractures. Fracture healing: haematoma → soft callus → hard (bony) callus → remodelling. Compartment syndrome = ↑pressure in a closed fascial space → ischaemia (the 6 Ps) — emergency.
Pain cascade (SAQ): tissue injury → mediators (prostaglandins, bradykinin) sensitise nociceptors → signal via Aδ/C fibres → dorsal horn → spinothalamic tract → thalamus → cortex (perception). Nociceptive vs neuropathic vs referred.
8b · Arthritis & BPH5.2 / 4.4
OA = "wear-and-tear" cartilage loss, mechanical, asymmetrical, large weight-bearing joints. RA = autoimmune (Type III, synovium), symmetrical small joints, systemic, morning stiffness, RF/anti-CCP.
BPH = benign hyperplasia of the peri-urethral prostate (age/DHT) → obstruction (hesitancy, frequency, nocturia, weak stream). Mx: α1-blockers ("-osin", relax smooth muscle) + 5α-reductase inhibitors. Prostate cancer = peripheral zone, PSA marker, androgen-dependent.
8c · Cell-Cycle Recapwhere cancer breaks
G1 → S (DNA synthesis) → G2 → M (mitosis) → cytokinesis. Checkpoints (esp. G1/S restriction point) police DNA integrity; p53 halts or apoptoses damaged cells. Cancer = oncogene accelerator stuck ON plus suppressor brakes OFF → checkpoints bypassed → autonomous proliferation.
Cancer treatment (4.2.3): surgery (remove), radiotherapy (DNA damage, local), chemotherapy (cytotoxic, hits rapidly dividing cells → AEs: myelosuppression, hair loss, GI/mucositis, nausea), and targeted/hormonal therapy. Diagnosis: biopsy + histology, imaging, tumour markers (PSA, CA-125). The cytotoxic AEs come from hitting normal fast-dividing cells (marrow, gut, hair).